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database-patterns

Database design and migration patterns for Alembic migrations, schema design (SQL/NoSQL), and database versioning. Use when creating migrations, designing schemas, normalizing data, managing database

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Imported from yonatangross/orchestkit (src/skills/database-patterns/SKILL.md). Install upstream with npx skills add yonatangross/orchestkit --skill database-patterns. Copyright stays with the author (MIT).

Database Patterns

Comprehensive patterns for database migrations, schema design, and version management. Each category has individual rule files in rules/ loaded on-demand.

Quick Reference

Category Rules Impact When to Use
Alembic Migrations 2 CRITICAL Data migrations, branch management
Schema Design 3 HIGH Normalization, indexing strategies, NoSQL patterns
Versioning 2 HIGH Changelogs, schema drift detection
Zero-Downtime Migration 2 CRITICAL Expand-contract, pgroll, rollback monitoring

| Database Selection | 1 | HIGH | Choosing the right database, PostgreSQL vs MongoDB, cost analysis |

Total: 10 rules across 5 categories

This skill is a wrap around Alembic and PostgreSQL, not a replacement for their docs. Read references/ork-delta.md first: it holds the version floors, corrections and house conventions that upstream does not carry. Everything in the table below was removed on purpose.

Upstream coverage (do not restate)

These topics are vendor documentation. Fetch them from the source instead of re-teaching them here.

Topic First-party source
Alembic autogenerate, async env.py template, revision/upgrade/downgrade/history CLI https://alembic.sqlalchemy.org/en/latest/autogenerate.html (our one correction to the async template is in references/ork-delta.md)
Migration branches, merge revisions, tuple down_revision, branch labels https://alembic.sqlalchemy.org/en/latest/branches.html
Multi-database env.py, batched backfill recipes, migration hooks, environment-conditional migrations https://alembic.sqlalchemy.org/en/latest/cookbook.html
Rollback and data-integrity test harnesses references/migration-testing.md
JSONB operators, indexing and storage tradeoffs https://www.postgresql.org/docs/current/datatype-json.html (normal forms and the house denormalization call stay in rules/schema-normalization.md)
Full index-type reference and syntax (B-tree, GIN, partial, covering, CREATE INDEX CONCURRENTLY, REINDEX) https://www.postgresql.org/docs/current/sql-createindex.html (the house subset we actually apply stays in rules/schema-indexing.md)
lock_timeout, statement_timeout, advisory locks during migration https://www.postgresql.org/docs/current/runtime-config-client.html and rules/versioning-drift.md
Enum type changes https://www.postgresql.org/docs/current/datatype-enum.html
Table partitioning https://www.postgresql.org/docs/current/ddl-partitioning.html
Trigger functions https://www.postgresql.org/docs/current/plpgsql-trigger.html
Foreign-key cascade semantics https://www.postgresql.org/docs/current/ddl-constraints.html
Temporal and audit-trail tables, CDC change logs, stored-procedure and view versioning https://www.postgresql.org/docs/18/sql-createtable.html (read references/ork-delta.md before assuming these give row history)
HNSW and vector index tuning (m, ef_construction, hnsw.ef_search) https://github.com/pgvector/pgvector
Generic pre-deployment, backup and schema-review checklists https://alembic.sqlalchemy.org/en/latest/tutorial.html
Async SQLAlchemy sessions, FastAPI wiring, connection pool tuning ork:python-backend skill

Quick Start

# Alembic: Auto-generate migration from model changes
# alembic revision --autogenerate -m "add user preferences"

def upgrade() -> None:
    op.add_column('users', sa.Column('org_id', UUID(as_uuid=True), nullable=True))
    op.execute("UPDATE users SET org_id = 'default-org-uuid' WHERE org_id IS NULL")

def downgrade() -> None:
    op.drop_column('users', 'org_id')
-- Schema: Normalization to 3NF with proper indexing
-- PG18: prefer uuidv7() (time-ordered, better B-tree locality) over gen_random_uuid() (random v4)
CREATE TABLE orders (
    id UUID PRIMARY KEY DEFAULT uuidv7(),
    customer_id UUID NOT NULL REFERENCES customers(id),
    created_at TIMESTAMPTZ NOT NULL DEFAULT NOW()
);
CREATE INDEX idx_orders_customer_id ON orders(customer_id);

Alembic Migrations

Migration management with Alembic for SQLAlchemy 2.0 async applications.

Rule File Key Pattern
Data Migration rules/alembic-data-migration.md Batch backfill, two-phase NOT NULL, zero-downtime
Branching rules/alembic-branching.md Feature branches, merge migrations, conflict resolution

Autogenerate setup is upstream. Our one deviation from Alembic's async env.py template (the in_greenlet() guard) is in references/ork-delta.md.

Schema Design

SQL and NoSQL schema design with normalization, indexing, and constraint patterns.

Rule File Key Pattern
Normalization rules/schema-normalization.md 1NF-3NF, when to denormalize, JSON vs normalized
Indexing rules/schema-indexing.md B-tree, GIN, HNSW, partial/covering indexes
NoSQL Patterns rules/schema-nosql.md Embed vs reference, document design, sharding

Versioning

Database version control and change management across environments.

Rule File Key Pattern
Changelog rules/versioning-changelog.md Schema version table, semantic versioning, audit trails
Drift Detection rules/versioning-drift.md Environment sync, checksum verification, migration locks

Rollback testing lives in references/migration-testing.md; the docstring convention for lossy downgrades is in references/ork-delta.md.

Database Selection

Decision frameworks for choosing the right database. Default: PostgreSQL.

Rule File Key Pattern
Selection Guide rules/db-selection.md PostgreSQL-first, tier-based matrix, anti-patterns

Key Decisions

Decision Recommendation Rationale
Async dialect postgresql+asyncpg Native async support for SQLAlchemy 2.0
NOT NULL column Two-phase: nullable first, then alter Avoids locking, backward compatible
Large table index CREATE INDEX CONCURRENTLY Zero-downtime, no table locks
Normalization target 3NF for OLTP Reduces redundancy while maintaining query performance
Primary key strategy UUID for distributed, INT for single-DB Context-appropriate key generation
Soft deletes deleted_at timestamp column Preserves audit trail, enables recovery
Migration granularity One logical change per file Easier rollback and debugging
Production deployment Generate SQL, review, then apply Never auto-run in production

Anti-Patterns (FORBIDDEN)

# NEVER: Add NOT NULL without default or two-phase approach
op.add_column('users', sa.Column('org_id', UUID, nullable=False))  # LOCKS TABLE!

# NEVER: Use blocking index creation on large tables
op.create_index('idx_large', 'big_table', ['col'])  # Use CONCURRENTLY

# NEVER: Skip downgrade implementation
def downgrade():
    pass  # WRONG - implement proper rollback

# NEVER: Modify migration after deployment - create new migration instead

# NEVER: Run migrations automatically in production
# Use: alembic upgrade head --sql > review.sql

# NEVER: Run CONCURRENTLY inside transaction
op.execute("BEGIN; CREATE INDEX CONCURRENTLY ...; COMMIT;")  # FAILS

# NEVER: Delete migration history
command.stamp(alembic_config, "head")  # Loses history

# NEVER: Skip environments (Always: local -> CI -> staging -> production)

Detailed Documentation

Resource Description
references/ork-delta.md Our corrections and house conventions. Read this first
references/migration-testing.md Upgrade/downgrade cycle and data-integrity test harnesses
references/postgres-vs-mongodb.md Head-to-head comparison behind the PostgreSQL-first default
references/db-migration-paths.md Cross-engine migration risk matrix
references/cost-comparison.md Managed database cost analysis
references/storage-and-cms.md Object storage and CMS selection
scripts/ Migration template, model change detector

Zero-Downtime Migration

Safe database schema changes without downtime using expand-contract pattern and online schema changes.

Rule File Key Pattern
Expand-Contract rules/migration-zero-downtime.md Expand phase, backfill, contract phase, pgroll automation
Rollback & Monitoring rules/migration-rollback.md pgroll rollback, lock monitoring, replication lag, backfill progress

Related Skills

  • sqlalchemy-2-async - Async SQLAlchemy session patterns
  • ork:testing-integration - Integration testing patterns including migration testing
  • caching - Cache layer design to complement database performance
  • ork:performance - Performance optimization patterns

Use it

Copy one of these into your project. Installing also returns the manifest and these snippets.

yaml
targets:
  - https://api.opensmartroute.ai/api/v1/registry/yonatangross-orchestkit-database-patterns/manifest   # or paste the manifest below

Manifest

An Open Capability Manifest: the router reads it to know what this does, what it costs and when to pick it.

yonatangross-orchestkit-database-patterns.ocm.jsonjson
{
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  "version": "1.0.0",
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      "provider": "skills.sh",
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      "path": "src/skills/database-patterns/SKILL.md",
      "ref": "HEAD",
      "url": "https://github.com/yonatangross/orchestkit/blob/HEAD/src/skills/database-patterns/SKILL.md",
      "key": "yonatangross/orchestkit/src/skills/database-patterns/SKILL.md"
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    "allowed_tools": [
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    "license": "MIT"
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  "instructions": "<!-- directive-density: intentional (teaches migration anti-patterns; NEVER markers describe real production-break conditions, not aspirational guidance) -->\n\n# Database Patterns\n\nComprehensive patterns for database migrations, schema design, and version management. Each category has individual rule files in `rules/` loaded on-demand.\n\n## Quick Reference\n\n| Category | Rules | Impact | When to Use |\n|----------|-------|--------|-------------|\n| [Alembic Migrations](#alembic-migrations) | 2 | CRITICAL | Data migrations, branch management |\n| [Schema Design](#schema-design) | 3 | HIGH | Normaliza",
  "cost": {
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Fetch it by URL: GET /api/v1/registry/yonatangross-orchestkit-database-patterns/manifest?version=1.0.0

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