panel-data-guide

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Panel Data Analysis Guide

Estimate and interpret fixed effects, random effects, and dynamic panel models using Stata, R, and Python for longitudinal/panel datasets.

What Is Panel Data?

Panel data (also called longitudinal or cross-sectional time-series data) tracks the same units (individuals, firms, countries) across multiple time periods. This structure enables:

• Controlling for unobserved heterogeneity (time-invariant omitted variables)
• Studying dynamic relationships (how X at time t affects Y at time t+1)
• Increased statistical power through more observations

Data Structure

| unit_id | year | gdp_growth | investment | trade_openness |
|---------|------|-----------|------------|----------------|
| USA     | 2015 | 2.9       | 20.5       | 28.3           |
| USA     | 2016 | 1.7       | 20.1       | 27.1           |
| USA     | 2017 | 2.3       | 20.8       | 27.5           |
| CHN     | 2015 | 6.9       | 43.3       | 39.9           |
| CHN     | 2016 | 6.7       | 42.7       | 37.2           |
| CHN     | 2017 | 6.9       | 43.1       | 38.1           |

Key notation:

• i = unit (cross-sectional dimension): i = 1, ..., N
• t = time period: t = 1, ..., T
• Y_it = dependent variable for unit i at time t

Model Specification

Pooled OLS

Y_it = alpha + beta * X_it + epsilon_it

Ignores panel structure; assumes no unit-specific effects. Rarely appropriate.

Fixed Effects (FE) Model

Y_it = alpha_i + beta * X_it + epsilon_it

Each unit has its own intercept (alpha_i) that captures all time-invariant unobserved heterogeneity. The "within" estimator removes alpha_i by demeaning.

Random Effects (RE) Model

Y_it = alpha + beta * X_it + u_i + epsilon_it

The unit-specific effect u_i is treated as random and uncorrelated with X_it.

Estimation in Stata

Setting Up Panel Data

* Declare panel structure
xtset country_id year

* Summarize within and between variation
xtsum gdp_growth investment trade_openness

Panel Diagnostics (Stata)

* Check for gaps in panel
gen gap = year - l.year if l.year != .
tab gap  // Should be all 1's for balanced annual panels

* Create balanced subsample
by country_id: gen T_i = _N
keep if T_i == max_T  // Keep only units observed in all periods

* Attrition analysis
gen in_panel = 1
tsfill, full
replace in_panel = 0 if missing(in_panel)

Fixed Effects

* Fixed effects regression
xtreg gdp_growth investment trade_openness, fe

* Store results for Hausman test
estimates store FE

* Fixed effects with robust standard errors (clustered by unit)
xtreg gdp_growth investment trade_openness, fe vce(cluster country_id)

* Test joint significance of fixed effects
testparm i.country_id

Two-Way Fixed Effects with reghdfe

* Entity and time fixed effects (fast, memory-efficient)
reghdfe gdp_growth investment trade_openness, ///
    absorb(country_id year) cluster(country_id)

* Two-way clustering (entity and year)
reghdfe gdp_growth investment trade_openness, ///
    absorb(country_id year) cluster(country_id year)

Random Effects

* Random effects regression
xtreg gdp_growth investment trade_openness, re

* Store results for Hausman test
estimates store RE

Hausman Test (FE vs. RE)

* Hausman specification test
hausman FE RE

* If p < 0.05: reject RE, use FE
* If p > 0.05: RE is consistent and efficient, prefer RE

Robust Hausman Test (Mundlak Approach)

* Mundlak (1978): add group means to RE model (robust to heteroskedasticity)
foreach var of varlist investment trade_openness {
    bysort country_id: egen m_`var' = mean(`var')
}
xtreg gdp_growth investment trade_openness ///
    m_investment m_trade_openness, re cluster(country_id)
test m_investment m_trade_openness
* Rejection => FE preferred; failure to reject => RE acceptable

First Differences

* First-differenced regression (alternative to FE)
reg D.gdp_growth D.investment D.trade_openness, vce(cluster country_id)

Estimation in R (plm Package)

library(plm)

# Convert to panel data frame
pdata <- pdata.frame(mydata, index = c("country_id", "year"))

# Fixed effects
fe_model <- plm(gdp_growth ~ investment + trade_openness,
                data = pdata, model = "within")
summary(fe_model)

# Random effects
re_model <- plm(gdp_growth ~ investment + trade_openness,
                data = pdata, model = "random")
summary(re_model)

# Hausman test
phtest(fe_model, re_model)

# Clustered standard errors
library(lmtest)
library(sandwich)
coeftest(fe_model, vcov = vcovHC(fe_model, type = "HC1", cluster = "group"))

# Time fixed effects
fe_twoway <- plm(gdp_growth ~ investment + trade_openness + factor(year),
                 data = pdata, model = "within")

# Test for time fixed effects
pFtest(fe_twoway, fe_model)

Estimation in Python (linearmodels)

import pandas as pd
from linearmodels.panel import PanelOLS, RandomEffects, compare

# Set multi-index for panel structure
data = data.set_index(["country_id", "year"])

# Fixed effects
fe = PanelOLS.from_formula(
    "gdp_growth ~ investment + trade_openness + EntityEffects",
    data=data
)
fe_result = fe.fit(cov_type="clustered", cluster_entity=True)
print(fe_result.summary)

# Random effects
re = RandomEffects.from_formula(
    "gdp_growth ~ investment + trade_openness + 1",
    data=data
)
re_result = re.fit()
print(re_result.summary)

# Two-way fixed effects (entity + time)
twoway = PanelOLS.from_formula(
    "gdp_growth ~ investment + trade_openness + EntityEffects + TimeEffects",
    data=data
)
twoway_result = twoway.fit(cov_type="clustered", cluster_entity=True)
print(twoway_result.summary)

# Compare models
print(compare({"FE": fe_result, "RE": re_result, "Two-way FE": twoway_result}))

Diagnostic Tests

Testing for Panel Effects

Testing for Serial Correlation

* Wooldridge test for serial correlation in panel data
xtserial gdp_growth investment trade_openness
* If p < 0.05: serial correlation present; use clustered SE or AR(1) correction

# Wooldridge test
pbgtest(fe_model)  # Breusch-Godfrey test for serial correlation

Testing for Heteroskedasticity

* Modified Wald test for groupwise heteroskedasticity
xttest3
* If p < 0.05: heteroskedasticity present; use robust/clustered SE

Advanced Panel Models

Dynamic Panel (Arellano-Bond GMM)

When a lagged dependent variable is included as a regressor:

* Difference GMM (Arellano & Bond 1991)
xtabond gdp_growth l.gdp_growth investment trade_openness, ///
    lags(1) twostep robust artests(2)

* System GMM (Blundell & Bond 1998) via xtabond2
* More efficient than difference GMM, especially with persistent series
xtabond2 gdp_growth l.gdp_growth investment trade_openness i.year, ///
    gmm(l.gdp_growth, lag(2 4) collapse) ///
    gmm(investment, lag(2 3) collapse) ///
    iv(trade_openness i.year) ///
    twostep robust orthogonal small

GMM Diagnostic Checklist

Difference-in-Differences (DID)

* Basic DID with two-way fixed effects
xtreg outcome treated##post, fe vce(cluster unit_id)

* Event study specification
xtreg outcome i.relative_time##treated, fe vce(cluster unit_id)

Standard Error Options

* Entity-clustered (default choice for firm/country panels)
xtreg gdp_growth investment trade_openness, fe cluster(country_id)

* Driscoll-Kraay standard errors (cross-sectional dependence)
xtscc gdp_growth investment trade_openness i.year, fe lag(3)

* Diagnostic tests for SE selection
xtreg gdp_growth investment trade_openness, fe
xttest3           // Modified Wald test for heteroskedasticity
xtserial gdp_growth investment trade_openness  // Wooldridge test for serial correlation
xtcsd, pesaran abs  // Pesaran CD test for cross-sectional dependence

Instrumental Variables in Panel Data

* IV with fixed effects (xtivreg)
xtivreg gdp_growth (investment = tax_incentive foreign_aid) ///
    trade_openness i.year, fe first

* Report Kleibergen-Paap rk Wald F for weak instruments

Reporting Results

Table X: Panel Regression Results (Fixed Effects)
Dependent Variable: GDP Growth (%)

                      (1)         (2)         (3)
                      FE          RE          Two-way FE
Investment           0.125***    0.118***    0.131***
                    (0.032)     (0.029)     (0.035)
Trade Openness       0.045**     0.051**     0.038*
                    (0.018)     (0.017)     (0.020)

Entity FE             Yes         No         Yes
Time FE               No          No         Yes
Observations          850         850        850
R-squared (within)   0.234       0.228      0.267
Hausman test (p)       --        0.003        --

Notes: Robust standard errors clustered at the country level in
parentheses. * p<0.10, ** p<0.05, *** p<0.01.

References

• Wooldridge, J.M. (2010), Econometric Analysis of Cross Section and Panel Data, 2nd ed., MIT Press
• Arellano & Bond (1991), "Some Tests of Specification for Panel Data," RES 58(2)
• Blundell & Bond (1998), "Initial Conditions and Moment Restrictions in Dynamic Panel Data Models," JoE 87(1)
• Roodman (2009), "How to Do xtabond2: An Introduction to Difference and System GMM in Stata," SJ 9(1)
• Cameron & Trivedi (2005), Microeconometrics: Methods and Applications, Cambridge University Press