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Skillv1.0.0

cancer_invasion

PhysiCell + PhysiBoSS sample modeling tumor cell invasion driven by a Boolean EMT/invasion signaling network. Cells switch between epithelial and mesenchymal states based on network dynamics.

by shasyanrz(0) 0 installs
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Free account. Installing gives you the manifest plus copy-paste snippets.

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About

Imported from shasyanrz/g2-sclc-physicell-dt (sample_projects_intracellular/boolean/cancer_invasion/AGENTS.md). Install upstream with npx skills add shasyanrz/g2-sclc-physicell-dt --skill cancer_invasion. Copyright stays with the author.

AGENTS.md — sample_projects_intracellular/boolean/cancer_invasion/

What This Directory Is

PhysiCell + PhysiBoSS sample modeling tumor cell invasion driven by a Boolean EMT/invasion signaling network. Cells switch between epithelial and mesenchymal states based on network dynamics.

G2 Relevance

Not directly used. Shows the pattern for per-cell Boolean state influencing phenotype (migration speed, adhesion). If adding SCLC-A/SCLC-N dynamic interconversion via a Boolean network, this sample demonstrates the implementation pattern.

Use it

Copy one of these into your project. Installing also returns the manifest and these snippets.

yaml
targets:
  - https://api.opensmartroute.ai/api/v1/registry/shasyanrz-g2-sclc-physicell-dt-cancer-invasion/manifest   # or paste the manifest below

Manifest

An Open Capability Manifest: the router reads it to know what this does, what it costs and when to pick it.

shasyanrz-g2-sclc-physicell-dt-cancer-invasion.ocm.jsonjson
{
  "ocm": "1",
  "id": "shasyanrz-g2-sclc-physicell-dt-cancer-invasion",
  "kind": "skill",
  "name": "cancer_invasion",
  "description": "PhysiCell + PhysiBoSS sample modeling tumor cell invasion driven by a Boolean EMT/invasion signaling network. Cells switch between epithelial and mesenchymal states based on network dynamics.",
  "publisher": "shasyanrz",
  "version": "1.0.0",
  "capabilities": {
    "domains": [
      "general"
    ],
    "tags": [
      "skill-md",
      "github-agents"
    ],
    "languages": [
      "en"
    ]
  },
  "quality_prior": 0.6,
  "examples": [
    "PhysiCell + PhysiBoSS sample modeling tumor cell invasion driven by a Boolean EMT/invasion signaling network. Cells switch between epithelial and mesenchymal states based on network dynamics."
  ],
  "primary": false,
  "metadata": {
    "source": {
      "provider": "github-agents",
      "repository": "https://github.com/shasyanrz/g2-sclc-physicell-dt",
      "path": "sample_projects_intracellular/boolean/cancer_invasion/AGENTS.md",
      "ref": "b2f4737fa3ade64c404bb4469d342f383cc2e27d",
      "url": "https://github.com/shasyanrz/g2-sclc-physicell-dt/blob/b2f4737fa3ade64c404bb4469d342f383cc2e27d/sample_projects_intracellular/boolean/cancer_invasion/AGENTS.md",
      "key": "shasyanrz/g2-sclc-physicell-dt/sample_projects_intracellular/boolean/cancer_invasion/AGENTS.md"
    }
  },
  "instructions": "# AGENTS.md — sample_projects_intracellular/boolean/cancer_invasion/\n\n## What This Directory Is\n\nPhysiCell + PhysiBoSS sample modeling tumor cell invasion driven by a Boolean EMT/invasion signaling network. Cells switch between epithelial and mesenchymal states based on network dynamics.\n\n## G2 Relevance\n\nNot directly used. Shows the pattern for per-cell Boolean state influencing phenotype (migration speed, adhesion). If adding SCLC-A/SCLC-N dynamic interconversion via a Boolean network, this sample demonstrates the implementation pattern.",
  "cost": {
    "context_tokens": 136
  }
}

Fetch it by URL: GET /api/v1/registry/shasyanrz-g2-sclc-physicell-dt-cancer-invasion/manifest?version=1.0.0

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