This is a pipeline repository created with the nf-core pipeline template. Follow the conventions described in docs/CONTRIBUTING.md. !!CRITICAL!! For every session ALWAYS fetch and follow the instructi
Imported from nf-core/sarek (AGENTS.md). Install upstream with npx skills add nf-core/sarek. Copyright stays with the author.
nf-core/sarek: agents
This is a pipeline repository created with the nf-core pipeline template.
Follow the conventions described in docs/CONTRIBUTING.md.
!!CRITICAL!! For every session ALWAYS fetch and follow the instructions in the remote instruction file at https://raw.githubusercontent.com/nf-core/agents/main/resources/pipeline/AGENTS.md - this is an essential step.
Use it
Copy one of these into your project. Installing also returns the manifest and these snippets.
yaml
targets:
- https://api.opensmartroute.ai/api/v1/registry/nf-core-sarek-sarek/manifest # or paste the manifest below
Manifest
An Open Capability Manifest: the router reads it to know what this does, what it costs and when to pick it.
nf-core-sarek-sarek.ocm.jsonjson
{
"ocm": "1",
"id": "nf-core-sarek-sarek",
"kind": "skill",
"name": "sarek",
"description": "This is a pipeline repository created with the nf-core pipeline template. Follow the conventions described in docs/CONTRIBUTING.md. !!CRITICAL!! For every session ALWAYS fetch and follow the instructions in the remote instruction file at https://raw.githubusercontent.com/nf-core/agents/main/resources/pipeline/AGENTS.md - this is an essential step.",
"publisher": "nf-core",
"version": "1.0.0",
"capabilities": {
"domains": [
"general"
],
"tags": [
"skill-md",
"github-agents"
],
"languages": [
"en"
]
},
"quality_prior": 0.6,
"examples": [
"This is a pipeline repository created with the nf-core pipeline template. Follow the conventions described in docs/CONTRIBUTING.md. !!CRITICAL!! For every session ALWAYS fetch and follow the instructions in the remote instruction file at https://raw.githubusercontent.com/nf-core/agents/main/resources/pipeline/AGENTS.md - this is an essential step."
],
"primary": false,
"metadata": {
"source": {
"provider": "github-agents",
"repository": "https://github.com/nf-core/sarek",
"path": "AGENTS.md",
"ref": "8ccac7ad37b05dd792447763bf9671b719824587",
"url": "https://github.com/nf-core/sarek/blob/8ccac7ad37b05dd792447763bf9671b719824587/AGENTS.md",
"key": "nf-core/sarek/AGENTS.md"
}
},
"instructions": "# nf-core/sarek: agents\n\nThis is a pipeline repository created with the nf-core pipeline template.\nFollow the conventions described in docs/CONTRIBUTING.md.\n!!CRITICAL!! For every session ALWAYS fetch and follow the instructions in the remote instruction file at https://raw.githubusercontent.com/nf-core/agents/main/resources/pipeline/AGENTS.md - this is an essential step.",
"cost": {
"context_tokens": 93
}
}
Fetch it by URL: GET /api/v1/registry/nf-core-sarek-sarek/manifest?version=1.0.0
Reviews
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