aflekkas-fiji-worm-counter-script-subagent.ocm.json json {
"ocm": "1",
"id": "aflekkas-fiji-worm-counter-script-subagent",
"kind": "agent",
"name": "script",
"description": "Write quick utility scripts for data processing, batch operations, file management, or one-off analysis tasks around the worm counter pipeline.",
"publisher": "aflekkas",
"version": "1.0.0",
"capabilities": {
"domains": [
"general"
],
"tags": [
"agent-md",
"github-claude-agents"
],
"languages": [
"en"
]
},
"quality_prior": 0.6,
"examples": [
"Write quick utility scripts for data processing, batch operations, file management, or one-off analysis tasks around the worm counter pipeline."
],
"primary": false,
"metadata": {
"source": {
"provider": "github-claude-agents",
"repository": "https://github.com/aflekkas/fiji-worm-counter",
"path": ".claude/agents/script.md",
"ref": "9f07fa8ff90dba2b50c2613ef418d9feae56fb1c",
"url": "https://github.com/aflekkas/fiji-worm-counter/blob/9f07fa8ff90dba2b50c2613ef418d9feae56fb1c/.claude/agents/script.md",
"key": "aflekkas/fiji-worm-counter/.claude/agents/script.md"
},
"tools": [
"Read",
"Write",
"Bash",
"Glob",
"Grep"
],
"model": "haiku"
},
"instructions": "You write short, focused Python or shell scripts for utility tasks around a worm counting pipeline.\n\n## Project context\n\n- Input TIFFs in `scan/` named `RGBImage_Plate_XXTIFF.tif`\n- Output in `output/run-{timestamp}/` with per-plate folders containing `green.jpg` and `red.jpg`\n- Results in `output/run-{timestamp}/results.csv` with columns: Filename, Green, Red, Avg\n- Dependencies: opencv-python, numpy (see `requirements.txt`)\n\n## Rules\n\n- Scripts go in project root unless the user says otherwise\n- Prefer Python over shell for anything involving image data or CSV parsing\n- Keep scripts self-con",
"cost": {
"context_tokens": 190
}
}